Computational design of a homotrimeric metalloprotein with a trisbipyridyl core

Abstract

This article reports the computational design of a threefold symmetric, self-assembling protein homotrimer containing a highly stable noncanonical amino acid-mediated metal complex within the protein interface. To achieve this result, recently developed protein–protein interface design methods were extended to include a metal-chelating noncanonical amino acid containing a bipyridine functional group in the design process. Bipyridine metal complexes can give rise to photochemical properties that would be impossible to achieve with naturally occurring amino acids alone, suggesting that the methods reported here could be used to generate novel photoactive proteins.

Document Details

Document Type
Pub Defense Publication
Publication Date
Dec 08, 2016
Source ID
10.1073/pnas.1600188113

Entities

People

  • Banumathi Sankaran
  • David Baker
  • Fabio Parmeggiani
  • Gustav Oberdorfer
  • Jeremy H. Mills
  • Jose Henrique Pereira
  • Maraia E. Ener
  • Patrick J Almhjell
  • Peter H. Zwart
  • William Sheffler

Organizations

  • Arizona State University
  • Defense Threat Reduction Agency
  • European Commission
  • Joint BioEnergy Institute
  • Lawrence Berkeley National Laboratory
  • National Institute of General Medical Sciences
  • Office of Basic Energy Sciences
  • Office of Naval Research Global
  • Swiss National Science Foundation
  • University of Washington

Tags

Fields of Study

  • Chemistry

Readers

  • Computational Modeling and Simulation
  • Molecular and Cellular Biochemistry
  • Organic Chemistry