The Pop-Gen Pipeline Platform: A Software Platform for Population Genomic Analyses
Abstract
The Pop-Gen Pipeline Platform (PPP) is a software platform for population genomic analyses. The PPP was designed as a collection of scripts that facilitate common population genomic workflows in a consistent and standardized Python environment. Functions were developed to encompass entire workflows, including input preparation, file format conversion, various population genomic analyses, and output generation. The platform has also been developed with reproducibility and extensibility of analyses in mind. The PPP is an open-source package that is available for download and use at https://ppp.readthedocs.io/en/latest/PPP_pages/install.html.
Document Details
- Document Type
- Pub Defense Publication
- Publication Date
- May 05, 2021
- Source ID
- 10.1093/molbev/msab113
Entities
People
- Andrew Webb
- Apeksha Sukesh Kallur
- Arun Sethuraman
- Jared Knoblauch
- Jody Hey
- Nitesh Sabankar
Organizations
- California State University San Marcos
- National Science Foundation
- Temple University
- United States Army Research Laboratory