De novo design of transmembrane β barrels
Abstract
Computational design offers the possibility of making proteins with customized structures and functions. The range of accessible protein scaffolds has expanded with the design of increasingly complex cytoplasmic proteins and, recently, helical membrane proteins. Vorobieva et al. describe the successful computational design of eight-stranded transmembrane β-barrel proteins (TMBs). Using an iterative approach, they show the importance of negative design to prevent off-target structures and gain insight into the sequence determinants of TMB folding. Twenty-three designs satisfied biochemical screens for a TMB structure, and two structures were experimentally validated by nuclear magnetic resonance spectroscopy or x-ray crystallography. This is a step toward the custom design of pores for applications such as single-molecule sequencing.
Document Details
- Document Type
- Pub Defense Publication
- Publication Date
- Feb 19, 2021
- Source ID
- 10.1126/science.abc8182
Entities
People
- A. K. Bera
- A. Kang
- Alyssa Q. Stiving
- Anastassia A. Vorobieva
- Binyong Liang
- Cameron M Chow
- Dagan C Marx
- David Baker
- David J. Brockwell
- G. Nasir Khan
- Jim Horne
- Karen G Fleming
- Lukas K. Tamm
- Paul White
- Sheena Radford
- Sinduja K. Marx
- Sophie R Harvey
- Stacey R. Gerben
- Vicki H. Wysocki
Organizations
- Air Force Office of Scientific Research
- Biotechnology and Biological Sciences Research Council
- Howard Hughes Medical Institute
- Johns Hopkins University
- Medical Research Council
- National Institutes of Health
- Ohio State University
- Open Philanthropy Project
- United States Department of Energy
- University of Leeds
- University of Virginia
- University of Washington
- Wellcome Trust Centre for Mitochondrial Research