MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps
Abstract
Heatmaps are an indispensible visualization tool for examining large-scale snapshots of genomic activity across various types of next-generation sequencing datasets. However, traditional heatmap software do not typically offer multi-scale insight across multiple layers of genomic analysis (e.g., differential expression analysis, principal component analysis, gene ontology analysis, and network analysis) or multiple types of next-generation sequencing datasets (e.g., ChIP-seq and RNA-seq). As such, it is natural to want to interact with a heatmap’s contents using an extensive set of integrated analysis tools applicable to a broad array of genomic data types.
Document Details
- Document Type
- Pub Defense Publication
- Publication Date
- Sep 22, 2016
- Source ID
- 10.1186/s12859-016-1260-x
Entities
People
- Bohdan B Khomtchouk
- Claes Wahlestedt
- James R. Hennessy
Organizations
- Army Research Office